rs216670890 SNP Detail

Summary

• ID
  rs216670890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71247597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAACCGG AAGCAGGGCC
  TTTAACATGG TCCAGTGGGT GAAGGGGCTT CTAATTCCAG CACTTGGGAG TCTGAGGTAG
  AAGGATCCTG TATTCCAGGC CAGCCTGGGA GTAAAGCAGT CTTCGGCTTT AAAAACCAAA
  GACCCTAGTG GAGCTTCCTG GCTCACTCGT TAAATTTCAG CCCTTGCGAG ACTGAGAGAT
  R
  ATAGAAAGGG ATTGGTGAAG GCGAGTGGAA ATGAAGGGTA GACAGACATC TCCTGAAACA
  GAACTGATCT TTAATCAGAA CTGAAGGGCT GCAGTCTCTC AGGGAAGTGA GACTATGCCC
  AAGTGGCACG TGTTGGGGAG TAAGGGGTTG GGTTTTGTAG GACTGAAAGG GGGGGGGGGA
  GGCGGAGGGA GGGAGCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321817323	CHEV_6_71220607	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216670890					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71247597 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	789 bp proximal
Krcc1	lysine-rich coiled-coil 1	1064 bp upstream
Mir8112	microRNA 8112	1058 bp upstream
Rr379579	regulatory region 379579	713 bp downstream
Rr379580	regulatory region 379580	108 bp upstream
Tssr56988	transcription start site region 56988	261 bp upstream
Tssr56989	transcription start site region 56989	962 bp upstream
Tssr56990	transcription start site region 56990	1059 bp upstream
Tssr61348	transcription start site region 61348	101 bp downstream
Tssr61349	transcription start site region 61349	118 bp downstream
Tssr61350	transcription start site region 61350	868 bp downstream