rs216673725 SNP Detail

Summary

• ID
  rs216673725
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:74817309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCCGGA GGAGACACGA
  ACTGGCTTGG GTGCTAGGGT CCGGTAGAGG CCCCGAGACG TATTGTTCCC AAAAGAATAG
  TCTGTGTATG TGTACCTTTC CGTAGTCCTC CGTTCCGCGT CGGAGAGGAG GAGCTGGGGA
  AATTGAGGAG AAAGGCTTAA CAGGCTAGGA CTTCCTTTGC TGAACTTACC CCCCCCCCCC
  M
  CCCCCCAAGG CTGGTTTCTA GTGCTAGGCC ACTGGAGGGA TCCAGGACCT CAGAGAGCTG
  ACTCGGTTTT GTTTTGGTCT TGGCGTGTGT GGGAGCAGTT GTGATCAGAG AGAATGCTTA
  ATTTGCCAGT CTCCATTCGC ATCAGAAAAG CGCGAGAAAT ATTTTGGTGT CTGGTCTCCT
  TCATTAGCCA GTGTTGCTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323750068	CHEV_11_74739985	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216673725					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74817309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3250	CpG island 3250	39 bp distal
Gm72316	predicted gene, 72316	127 bp downstream
Rr451010	regulatory region 451010	721 bp distal
Rr451011	regulatory region 451011	650 bp distal
Rr451012	regulatory region 451012	374 bp distal
Rr451013	regulatory region 451013	454 bp distal
Rr451014	regulatory region 451014	within coordinates
Rr451015	regulatory region 451015	1547 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor	Intron
Srr	serine racemase	mRNA-UTR
Tssr102917	transcription start site region 102917	650 bp downstream
Tssr102918	transcription start site region 102918	616 bp downstream
Tssr102919	transcription start site region 102919	574 bp downstream
Tssr102920	transcription start site region 102920	350 bp downstream
Tssr102921	transcription start site region 102921	381 bp upstream
Tssr102922	transcription start site region 102922	1209 bp upstream
Tssr102923	transcription start site region 102923	1229 bp upstream
Tssr102924	transcription start site region 102924	1243 bp upstream
Tssr109155	transcription start site region 109155	767 bp upstream
Tssr109156	transcription start site region 109156	498 bp upstream
Tssr109157	transcription start site region 109157	1036 bp downstream