rs216678573 SNP Detail

Summary

• ID
  rs216678573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36785796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCTCCCA GGCCCTTCCT
  TCCAACACAC ACACACCACA CACACACACA CACACACACA CACACACACA CACACACACA
  CACACACTTT TTAAACTATG CCTGGTAGTT TCAAGAGGAA AGATGCTGAC CCACTAGAAC
  TCTGTTACTT TGTTCTCCCC TGAAGTGTGC ATTCCTTCTG TGAGGCACCC ACTCTACTTC
  Y
  GAAGTCTCGC TCTGCTCCTA CAGCTCCAAA GTCCTTATTA CTAAGGAGAC AAGAACTAGT
  TAGCAATCTG TATGTGAGTT ACATGTGTGC TCTTGTATTT ATATGCCACA TCAGATCCCA
  TAGAAGTGTG TGTGTGTGTG TGTGTGTGTG CGTGTGTGTG TGCATGTGTG TGTGCGCATG
  CACACACACA TATTTTAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367971979	MGP_WTSI_6_36758861	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216678573					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367971979	MGP_WTSI_6_36758861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36785796 () rs orientation: forward

Symbol	Name	Function Class
Gm53282	predicted gene, 53282	161 bp downstream
Ptn	pleiotrophin	within coordinates
Rr146140	regulatory region 146140	within coordinates
Tssr60337	transcription start site region 60337	1077 bp downstream
Tssr60338	transcription start site region 60338	1120 bp downstream
Tssr60339	transcription start site region 60339	1142 bp downstream
Tssr60340	transcription start site region 60340	1177 bp downstream
Tssr60341	transcription start site region 60341	1210 bp downstream
Tssr60342	transcription start site region 60342	1238 bp downstream
Tssr60343	transcription start site region 60343	1275 bp downstream
Tssr60344	transcription start site region 60344	1300 bp downstream