rs216678797 SNP Detail

Summary

• ID
  rs216678797
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173106533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGTTGCAA CCCAACACCA GACCGTTCCT
  GTTCTCTCCT GCTCAGAGCC ATGGGGATCA CTGCCCGCTG GCCCGGTGAC CCTTCTTGGA
  AGGGCGTGGC AGAAGGGGAA GGCTTCCCAG CCGGCCAAAA GGGATACACA CACACACACA
  S
  AGACCCAGCT GGAGAAGTCT GAGAGGCCAG AGGTGGAGAG AGGCCTCAAA TCAGACACAC
  CCCTGACACC ATGACAGGTG GCTCTAAGGC TTGGCTCTGC CTGGGCAAgc taagcccaca
  ctccaggatc cctcagccca agttcaaatc                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320622152	CHEV_2_173090241	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216678797					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173106533 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	within coordinates
Rr571916	regulatory region 571916	194 bp proximal
Rr571917	regulatory region 571917	1026 bp proximal
Tssr22050	transcription start site region 22050	310 bp upstream
Tssr27982	transcription start site region 27982	1194 bp downstream