rs216699443 SNP Detail

Summary

• ID
  rs216699443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73072396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTA TTAAGGGGGC TACGATGCTC
  Y
  AGGCTGGCCT CAACTCCCTT CTAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322708330	CHEV_8_74842451	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216699443					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73072396 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	46 bp proximal
Gm63983	predicted gene, 63983	693 bp upstream
Klf2	Kruppel-like transcription factor 2 (lung)	510 bp upstream
Rr382265	regulatory region 382265	879 bp downstream
Rr400967	regulatory region 400967	274 bp upstream
Rr665299	regulatory region 665299	1860 bp distal
Rr665300	regulatory region 665300	704 bp distal
Rr665301	regulatory region 665301	203 bp distal
Rr665302	regulatory region 665302	within coordinates
Tssr2606	transcription start site region 2606	348 bp downstream
Tssr77968	transcription start site region 77968	329 bp upstream
Tssr77969	transcription start site region 77969	341 bp upstream
Tssr77970	transcription start site region 77970	501 bp upstream
Tssr77971	transcription start site region 77971	981 bp upstream
Tssr77972	transcription start site region 77972	1031 bp upstream
Tssr77973	transcription start site region 77973	1068 bp upstream
Tssr77974	transcription start site region 77974	1124 bp upstream
Tssr77975	transcription start site region 77975	1274 bp upstream
Tssr77976	transcription start site region 77976	1513 bp upstream