rs216699737 SNP Detail

Summary

• ID
  rs216699737
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119798563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAAATCC CTGGGTCCCA
  CACGGTGGAA GGAGAGCACC AACTCCAGCA AAGTCGTCCT CTGACCTCCA CACAGGAATT
  GTAGCATGTG TCAACTCACT GTATAATCAA AATAAAAATG TAATGATGAC TGAATTAATG
  AAGAAAGGAA GCAGTCTCAA AACAAGCCTC AGGGTGGGTA GAATGTAGAT GTGGCTATCA
  Y
  GGAGCCATCC TGGTGCATGT AAGTGCTCAT TCGCTGCGGA GCGGAGGCAG GGGGATCGCC
  CTCCACAGCA AAGCAAGCAA GCTTGGGCTG CATAAGAGCT TGTCTCAAAA AGTGTGTATG
  TGTGTGTCAG TGTGTGTGTT GAGTGTGTGG GTGTGGTGTG TATGTACTGG GATAACTTGC
  TATAATGCCA GTACTTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323223746	CHEV_9_119878615	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216699737					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119798563 () rs orientation: forward

Symbol	Name	Function Class
Csrnp1	cysteine-serine-rich nuclear protein 1	1666 bp downstream
Rr688588	regulatory region 688588	529 bp proximal
Rr688589	regulatory region 688589	1421 bp proximal
Ttc21a	tetratricopeptide repeat domain 21A	1704 bp downstream