rs216701839 SNP Detail

Summary

• ID
  rs216701839
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156045814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGGCAT AGAGGCTGTC
  TTTCTTGGCA TATATAACAC ATGGATACAC ACACGCACGC ACGCACGGTA CTTCCCTTTA
  CGTTCTGCTC TATCCCTGCT TGATTTGTTA GGCTTCTCTG ACTGGGTGTG GCCTGGAGCT
  GGGACGGCTT GCTTGGTCAC CTTTCACTCT TTTTTGGAGT GAGAATTGAG GGCCACTATT
  S
  TAGAACATTG CGTTCTGTTT ACCAGGACCC ATACCTACTG GGACCAACCA GCGTGTGTTA
  GGGATGCAGC TCCAGTCCCT TCATAGAGCA GTTGGAACCA CACCTGGCTG TTTGTAGCCA
  CGGCTTTTAC CAGTTGGAGG CTATCTGGCT ACTGGGAATC CTGGACCAGT CTCAAGGGCC
  ACTACCTCGT AATCACTGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363807958	MGP_WTSI_4_155335466	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216701839					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363807958	MGP_WTSI_4_155335466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156045814 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	961 bp upstream
Cpgi15495	CpG island 15495	947 bp proximal
Gm42365	predicted gene, 42365	1387 bp upstream
Gm68249	predicted gene, 68249	within coordinates
Rr606617	regulatory region 606617	1625 bp distal
Rr606618	regulatory region 606618	1903 bp distal
Rr606619	regulatory region 606619	471 bp proximal
Rr606620	regulatory region 606620	1756 bp proximal
Tssr40744	transcription start site region 40744	935 bp upstream
Tssr40745	transcription start site region 40745	985 bp upstream
Tssr40746	transcription start site region 40746	1054 bp upstream
Tssr40747	transcription start site region 40747	1184 bp upstream
Ube2j2	ubiquitin-conjugating enzyme E2J 2	1753 bp downstream