rs216707176 SNP Detail

Summary

• ID
  rs216707176
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122639893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACCCCGA AGTGGCCCAG
  CACCTCCTCC ACGGTCTTTG TGTGAGCGTT CTCCATGGCT GCGGGGGCCC CGGCCGGCCT
  CGCCTCGCGT CCCCGCGGCC TCCTCGCCTA CCGCCTCGCA CTCCGGCCGC GGGCTCGTGC
  CACCGCGGGC GCCCGGGCGC GGACAGCTGT CCCCTCCTTT TTCTTCTCCT CCTCCTCCTC
  C
  GCGGCGGCGG CGGCCGCTTC CGCCTGACCG GGGCGCTGAA TCACCCGAGC CCCCTCCCCC
  AGAAACCGCC GCACGCGGCC CGGCCTCGCC GAGCCCGCCC GAGGGACTGC GAGCCTCCCG
  CCCCGCCGCG AGTGTGGGTC GCTTCAGCAG CTGCCAGCCG GCCGCGGGCA GCGCAGGCCC
  CGGGCGCTGC GCCGAGGAGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366519164	MGP_WTSI_5_122951839	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216707176					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366519164	MGP_WTSI_5_122951839	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122639893 () rs orientation: forward

Symbol	Name	Function Class
Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	within coordinates
Cpgi16553	CpG island 16553	within coordinates
Gm43361	predicted gene 43361	982 bp downstream
Gm57291	predicted gene, 57291	615 bp upstream
Rr378565	regulatory region 378565	1922 bp upstream
Rr399329	regulatory region 399329	1623 bp upstream
Tssr1626	transcription start site region 1626	899 bp downstream
Tssr48697	transcription start site region 48697	1095 bp downstream
Tssr48698	transcription start site region 48698	217 bp downstream
Tssr48699	transcription start site region 48699	95 bp downstream
Tssr48700	transcription start site region 48700	20 bp downstream
Tssr48701	transcription start site region 48701	636 bp upstream
Tssr53124	transcription start site region 53124	1489 bp upstream
Tssr53125	transcription start site region 53125	1455 bp upstream
Tssr53126	transcription start site region 53126	997 bp upstream
Tssr53127	transcription start site region 53127	607 bp upstream
Tssr53128	transcription start site region 53128	565 bp upstream
Tssr53129	transcription start site region 53129	549 bp upstream
Tssr53130	transcription start site region 53130	42 bp upstream
Tssr53131	transcription start site region 53131	306 bp downstream
Tssr53132	transcription start site region 53132	332 bp downstream
Tssr53133	transcription start site region 53133	362 bp downstream
Tssr53134	transcription start site region 53134	437 bp downstream
Tssr53135	transcription start site region 53135	453 bp downstream
Tssr53136	transcription start site region 53136	797 bp downstream
Tssr53137	transcription start site region 53137	901 bp downstream