rs216712045 SNP Detail

Summary

• ID
  rs216712045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:87749670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTGTGCA GACAAGCCCA
  CAGGCTATGG CTCCAGCATT CGGAGGGCAC CTCAGACAGG CATTGTGGAT GAGTGTTGCT
  TCCGGAGCTG TGATCTGAGG AGACTGGAGA TGTACTGTGC CCCACTGAAG CCTACAAAAG
  CAGCCCGCTC TATCCGTGCC CAGCGCCACA CTGACATGCC CAAGACTCAG AAGGTACGAT
  Y
  GAGTGGGTGA AATGCAGTCA TTCTTGAACG GTCTGTTATA TGTGATGCAG GGGGAGGGGG
  GCAAATGGAA ATCCTATGTC TCCTGAGTGA TAGGTCACAA AGTTCCAATT CTACCAATAA
  GATGGCTTAT GGGTGCACCC TTCCAATTAC TTTCTACTCT GAATTATCTT TTCCACTCCC
  CTGGACAATC TGACACTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381166112	MGP_WTSI_10_87376553	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216712045					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381166112	MGP_WTSI_10_87376553	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:87749670 () rs orientation: forward

Symbol	Name	Function Class
Igf1	insulin-like growth factor 1	within coordinates
Tssr95088	transcription start site region 95088	186 bp downstream
Tssr95089	transcription start site region 95089	169 bp downstream
Tssr95090	transcription start site region 95090	146 bp downstream
Tssr95091	transcription start site region 95091	124 bp downstream
Tssr95092	transcription start site region 95092	106 bp downstream
Tssr95093	transcription start site region 95093	72 bp downstream
Tssr95094	transcription start site region 95094	47 bp downstream
Tssr95095	transcription start site region 95095	39 bp downstream
Tssr95096	transcription start site region 95096	568 bp upstream
Tssr95097	transcription start site region 95097	584 bp upstream
Tssr95098	transcription start site region 95098	716 bp upstream
Tssr95099	transcription start site region 95099	1479 bp upstream
Tssr98816	transcription start site region 98816	1513 bp downstream