rs216729004 SNP Detail

Summary

• ID
  rs216729004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136485955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTACAACT AAGCCATACC
  TCCAGCTTCT GACTGGAATA TTTCATTTTA ACATCTATGT TCAAGTATTT CTGTGCAATC
  TCACCTTCTA TTTGGTGAGA CTCCCATCCA CAGCATCATG GGAGACCATG GAGCATATAG
  ATTGTTGCTT ATCATTGTTA TGCAAGGTAC ACAGTGGATA GATCAGTATG TGGGCAGACA
  Y
  AAGTAATTCT GCAAATGTTT ATGCCATAGT GTCCTCCTAT CAAAAATGGA GACAAAATAG
  TACCAGTGAG CATCATGAGG CGGCTATATA CAGCAAGACC GGGGGGTGAG GGGTGGCTCA
  GTAGTAGAGC CCCTGCCTAG AATCCCCCCC CCAGTGATGG GAGGGCTGGG GGCGTGGCTC
  AGTAGTAGAG TCCCTACCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321699556	CHEV_5_136932971	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216729004					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136485955 () rs orientation: forward

Symbol	Name	Function Class
Cux1	cut-like homeobox 1	within coordinates
Rr622611	regulatory region 622611	377 bp distal
Rr622612	regulatory region 622612	1295 bp proximal
Tssr53839	transcription start site region 53839	1360 bp downstream
Tssr53840	transcription start site region 53840	1406 bp downstream