rs216737945 SNP Detail

Summary

• ID
  rs216737945
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47775599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGAGTGTG CTCCACCTCG TACAGGTACT
  TGTGGGTTAA ATCGTCTTTC AGCCTTCCTC GTTCATCAGA AAAGTTTTCA GGAACCACTA
  GAATAGGGAA AGAGGATAGC Tcgctcgctc gcacgcacgc acgcacgcac gcacgcacgc
  W
  cgcacgcacg cacgcacgca cCGCAAGCTC ATGCTGAAAA TCATGACGCA CAGATATGGA
  ATGAGACATA AAGATGTAAA CATTTGATTG ATAGGACTGA GGCTATTTGG TGATTTAAAA
  AAAAAATGTG TAAAACAATT TGCCTCAACC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325827430	CHEV_19_47861650	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216737945					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47775599 () rs orientation: forward

Symbol	Name	Function Class
Cfap43	cilia and flagella associated protein 43	within coordinates
Cpgi11037	CpG island 11037	45 bp distal
D19Dcr56	DNA Segment, Chr 19, Derry C. Roopenian 56	1381 bp proximal
Rr358623	regulatory region 358623	1602 bp proximal
Tssr159755	transcription start site region 159755	31 bp upstream