rs216738425 SNP Detail

Summary

• ID
  rs216738425
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79165746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCCCAA GTGCTGGGAT
  TTAAGGCATG CACCACCAAG CCTGACTTAT TTTTGATTGC GCGCGCGCGC GTGCGTGTGC
  GTGTGCGTGT GCGTGTGCGT GTGTGTGTGT GTGTGTGTGT GTGTGTATAC AGGTATATGC
  ATATGAGTGC TTGAATTCTC AGAGGTCAGA GGCCTGGGAT TCTCTGGAGC TGGAGTTCTA
  G
  GCAATTGTTA GCCTCCTGGA ACGGGTGCTA GGAACTGAAC TCAGAAGCCC TAAGGGCTCC
  TGACTGCTGA GCCCTCTCTC TAGCCCATAT TTACAATACT TGGTGTACTG GCTGGTTTTG
  TCTGTCAACT TGACACAGGA TGGAGTTATC ACAGGGAAAG GAGCTTCAGT TGGCAAAATG
  CCTCCATGAG ATCCAGCTGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759454	CHEV_11_79088422	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216738425					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79165746 () rs orientation: forward

Symbol	Name	Function Class
D11Mit94	DNA segment, Chr 11, Massachusetts Institute of Technology 94	46 bp distal
Gm44787	predicted gene 44787	972 bp upstream
Rr241861	regulatory region 241861	within coordinates
Rr251784	regulatory region 251784	677 bp distal
Rr251785	regulatory region 251785	1056 bp proximal
Tssr3596	transcription start site region 3596	1860 bp upstream
Tssr103435	transcription start site region 103435	1660 bp upstream
Tssr109475	transcription start site region 109475	1029 bp upstream