rs216740635 SNP Detail

Summary

• ID
  rs216740635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:96183889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAGGAAT TTGCTAGCCA
  CACCTTATCC CGACCCCACT GAAGACATAA ACTTTACTTG GGAAATAAAC CCGTTTCCTA
  GAGTGAGTAC CGGAAGCACG CTCCGCTCTA TTACATAATT CTCTCTTTTT TTAATATACT
  CCTCCCCGTC ACCCGATAGG TGCTCCCATC GGAAAGACTA CCTGAAATAA ACCCATCCAG
  R
  CTCTTACCAG CTTGTGACCT TGGGCTAGTG ACTTTGCCAC TGGTGGCTGT CTCTAAAATG
  GGAATCCTAG TAGACCAAAG GAGAAGCATG AGGCTCTCCA CATTTGCAGA CCGGGGAGGG
  CTCCAACACC CGGGTAAATG CAAATTTAAG TGGTACTAAA AAAAAAAAAA GATACAAATT
  TTGAATTCCC TATGTACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395085937	MGP_WTSI_15_96116439	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216740635					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395085937	MGP_WTSI_15_96116439	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:96183889 () rs orientation: forward

Symbol	Name	Function Class
Arid2	AT-rich interaction domain 2	1510 bp upstream
Cpgi7599	CpG island 7599	125 bp distal
Cpgi7600	CpG island 7600	281 bp proximal
Gm38469	predicted gene, 38469	within coordinates
Gm62599	predicted gene, 62599	303 bp upstream
Rr369997	regulatory region 369997	1635 bp downstream
Rr391146	regulatory region 391146	within coordinates
Rr508522	regulatory region 508522	1910 bp distal
Rr508523	regulatory region 508523	1023 bp distal
Rr508524	regulatory region 508524	410 bp distal
Rr508525	regulatory region 508525	within coordinates
Rr508526	regulatory region 508526	677 bp proximal
Rr508527	regulatory region 508527	926 bp proximal
Rr508528	regulatory region 508528	1020 bp proximal
Tssr132814	transcription start site region 132814	within coordinates
Tssr132815	transcription start site region 132815	748 bp upstream
Tssr132816	transcription start site region 132816	781 bp upstream
Tssr132817	transcription start site region 132817	852 bp upstream
Tssr132818	transcription start site region 132818	922 bp upstream
Tssr132819	transcription start site region 132819	1240 bp upstream
Tssr132820	transcription start site region 132820	1262 bp upstream
Tssr132821	transcription start site region 132821	1529 bp upstream
Tssr132822	transcription start site region 132822	1758 bp upstream
Tssr136021	transcription start site region 136021	469 bp upstream
Tssr136022	transcription start site region 136022	276 bp upstream
Tssr136023	transcription start site region 136023	108 bp upstream