rs216748506 SNP Detail

Summary

• ID
  rs216748506
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70082434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAGGTTTC CTTGCTTCCC ATCCTTCTGT
  GTTTGGGTAA GTGGAGAGAC AGGGATCCTA CTCGTCTCTA ATGAAGGTTC TATAGAAAGG
  GCCAGGGGCG TGGTAAGATG GCAAAGAGTG ACATTAGGAA CTCTGGACTG GATTTTTAAA
  W
  tttttttctt tcttttctct ctctctttct ttctttcttt ctttctttct ttctttcttt
  ctttctttct ttctttcctc ctcctcctcc tcctcctcct cctcctcctc ctcctcctcc
  tcctcAGGGT CGTGGTAAGA TGGCAAAGAG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323355957	CHEV_10_69709352	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216748506					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70082434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1697	CpG island 1697	676 bp distal
Gm66806	predicted gene, 66806	1438 bp upstream
Slc16a9	solute carrier family 16 (monocarboxylic acid transporters), member 9	within coordinates
Tssr94008	transcription start site region 94008	1464 bp downstream
Tssr94009	transcription start site region 94009	1350 bp downstream
Tssr94010	transcription start site region 94010	1286 bp downstream
Tssr94011	transcription start site region 94011	171 bp downstream