rs216749370 SNP Detail

Summary

• ID
  rs216749370
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3071977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCC TAACATGTTG GTGTAGTGAG
  K
  CCTAGGTCTG CCAGAGCTAC ACAGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BUB/BnJ	C57BL/6J	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss920693825	MGP_WTSI_11_3121977	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G	T	T	G	G	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BUB/BnJ	C57BL/6J	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs216749370					SNP	T	T	G	T	T	G	G	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920693825	MGP_WTSI_11_3121977	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3071977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	1287 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Rr369110	regulatory region 369110	1844 bp upstream
Rr402381	regulatory region 402381	752 bp downstream
Rr441449	regulatory region 441449	172 bp proximal
Rr441450	regulatory region 441450	942 bp proximal
Rr441451	regulatory region 441451	1349 bp proximal
Rr441452	regulatory region 441452	1508 bp proximal
Tssr106442	transcription start site region 106442	1928 bp downstream