rs216749596 SNP Detail

Summary

• ID
  rs216749596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:185151562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAATGG CTCCTAAGGT
  CACCCTGTGC TGGGGTTAGT CCCAGTGTTG ACCCTGCTTC TCTGTGTGTC ATACTTCTTC
  ACATGTTCCC CTACCTTCAG GGAAGATACC AGCAGCTACT TCTTTAAGCC AGTTTATGTG
  TGGGTACACG ATGTTAAAAG AGAAACTTGC TGTTAGCTTA ATCAAAATTA ATTTAAAATG
  Y
  CATCTACTTC TGCATCCCCC ACTTCCCTCT CCTCCTTCTG TGCTGTGAGG GTCACGGCTT
  GCTGGCATTC GCTTACATTT CCTTTGGCTT CGACTTGAGT ACTGCTCAAC ATACACACAC
  TCTCACACAC ACACACACAC TATCTATCTA TCTATCTATC TATCTATCTA TCTATCTATC
  TATCTATCAT TCTATCTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320175598	CHEV_1_187243244	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216749596					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185151562 () rs orientation: forward

Symbol	Name	Function Class
Eprs1	glutamyl-prolyl-tRNA synthetase 1	Intron
Rr425382	regulatory region 425382	1143 bp distal
Rr425383	regulatory region 425383	1514 bp proximal
Tssr10610	transcription start site region 10610	1071 bp downstream