rs216750525 SNP Detail

Summary

• ID
  rs216750525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117736098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAGTTA CAGGGGAAGG
  TTCCAGACAA ACAGTAATAA GGAATGTCTG TGGTGGCCAA TTGTGAATGG AACGTACCAG
  TTTCCAGTGT AGTGCACTCT TCAGAGAAGT CCAAGGTTCC CATGTGCTCG GGGAGGCTGA
  ACCTGACTTA TGACCGCCCC TCCCCCCGCC TCGACCCCCC CCCCCCCCGC CCCCATCCCA
  Y
  GACCCTGAGC TGGAATGGAA GGTTCTTCCA AAGAAAGAGT GTGTCAGGCT CAGTATTCCC
  CATTACTAGG AGTCATCTCT GGGTCATACT TGGTAGATTC CAGGGAGTTT CTCTGCACTT
  ACTTTACACA CACACACACA CACACACACA CACACACACA CACACACACA CACACTTCCA
  AGCATCTCTT TCAGTATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	I/LnJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J
ss369805082	MGP_WTSI_6_117709155	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	I/LnJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J
rs216750525					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369805082	MGP_WTSI_6_117709155	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117736098 () rs orientation: forward

Symbol	Name	Function Class
Rr637359	regulatory region 637359	329 bp distal
Rr637360	regulatory region 637360	425 bp distal