rs216753822 SNP Detail

Summary

• ID
  rs216753822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191822642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGCCGGGA CCCCGCGCGT CCCCAGCCGG
  CCGGTTCCCG GGCGCTCGAG GGCCGGGAGA CGATGTGGAG GCCCCGGAGG CGGCATGGAG
  GGCGGGGAGG CGGCCTCTGC CCTGTCTCAG CTGAAGGAAT TTGGCCTGCT GAGGCGGGGC
  Y
  GCGGGGCGGG AGCTGCTCCC GTGACCGGGA ACCCGGGATG GCGGTCTCAG GAGCTGCTCC
  GGTGAGGAGC GGCGGGGATG GCGGCCTTTG ACAGGAGCTA TGAGGATGGC GGCCTTGGAC
  CGGAGCAGCT CCGGTGACGC GGGCAGGGGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320197035	CHEV_1_193962227	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216753822					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191822642 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1232	CpG island 1232	within coordinates
Gm10516	predicted gene 10516	within coordinates
Gm37055	predicted gene, 37055	1521 bp downstream
Rcor3	REST corepressor 3	283 bp upstream
Rr29207	regulatory region 29207	within coordinates
Tssr15823	transcription start site region 15823	715 bp upstream
Tssr15824	transcription start site region 15824	412 bp upstream
Tssr15825	transcription start site region 15825	378 bp upstream
Tssr15826	transcription start site region 15826	298 bp upstream