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rs216760594 SNP Detail
Summary
  • ID
    rs216760594
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44130023 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTCTCTATT CCTCATCTTC
CTTTCTCTGT ACCCTCTTCC CCCACTTCCT CATCCTCTCC TCTCTTCCTT CTTGCCCTCA
TCTTTTCCTG CAGCTCCAGT TCTCCCATCA TGTTTCTCTT GCTCTTCCTT CTCCATCCAT
CACTTTCCTC TTCCTTCCAA TTCTCATTTC CTTCCTCCTT TTCCTTAGTC CTGTCTACCA
Y
TACCTCTTCC TCCTCCTCTC CCACTGTCTT TTCCTGTGCT CACTCCCTTG CCCACTCACC
TTCTTTCAAG TTTCTCCTTT ATCTTCTTTA CTCCTGGACA ACCCCCCAGT ATCATCTTTT
TAGTATTTTC CTCCCCCTTT TCTTCTTCCA CCAGATCTCT CCTTCACTCC TACCCATCTT
TTATTCTTCC TTTTTCTCTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156142 MGP_WTSI_7_51735969 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216760594 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156142 MGP_WTSI_7_51735969 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44130023 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646103 regulatory region 646103 1985 bp proximal
Tssr2227 transcription start site region 2227 1579 bp downstream
Tssr2228 transcription start site region 2228 516 bp downstream
Tssr2229 transcription start site region 2229 241 bp downstream
Tssr2230 transcription start site region 2230 58 bp downstream
Tssr2231 transcription start site region 2231 67 bp upstream
Tssr2232 transcription start site region 2232 242 bp upstream
Tssr2233 transcription start site region 2233 275 bp upstream
Tssr2234 transcription start site region 2234 434 bp upstream
Tssr2235 transcription start site region 2235 1068 bp upstream
Tssr66282 transcription start site region 66282 1993 bp downstream
Tssr66283 transcription start site region 66283 1979 bp downstream
Tssr66284 transcription start site region 66284 1967 bp downstream
Tssr66285 transcription start site region 66285 1953 bp downstream
Tssr66286 transcription start site region 66286 1914 bp downstream
Tssr66287 transcription start site region 66287 1878 bp downstream
Tssr66288 transcription start site region 66288 1853 bp downstream
Tssr66289 transcription start site region 66289 1771 bp downstream
Tssr66290 transcription start site region 66290 1733 bp downstream
Tssr66291 transcription start site region 66291 1707 bp downstream
Tssr66292 transcription start site region 66292 1675 bp downstream
Tssr66293 transcription start site region 66293 1653 bp downstream
Tssr66294 transcription start site region 66294 1629 bp downstream
Tssr66295 transcription start site region 66295 1364 bp downstream
Tssr66296 transcription start site region 66296 1193 bp downstream
Tssr66297 transcription start site region 66297 1169 bp downstream
Tssr66298 transcription start site region 66298 1114 bp downstream
Tssr66299 transcription start site region 66299 1094 bp downstream
Tssr66300 transcription start site region 66300 1071 bp downstream
Tssr66301 transcription start site region 66301 1055 bp downstream
Tssr66302 transcription start site region 66302 1014 bp downstream
Tssr66303 transcription start site region 66303 1005 bp downstream
Tssr66304 transcription start site region 66304 1000 bp downstream
Tssr66305 transcription start site region 66305 961 bp downstream
Tssr66306 transcription start site region 66306 907 bp downstream
Tssr66307 transcription start site region 66307 858 bp downstream
Tssr66308 transcription start site region 66308 841 bp downstream
Tssr66309 transcription start site region 66309 791 bp downstream
Tssr66310 transcription start site region 66310 722 bp downstream
Tssr66311 transcription start site region 66311 699 bp downstream
Tssr66312 transcription start site region 66312 680 bp downstream
Tssr66313 transcription start site region 66313 670 bp downstream
Tssr66314 transcription start site region 66314 652 bp downstream
Tssr66315 transcription start site region 66315 645 bp downstream
Tssr66316 transcription start site region 66316 580 bp downstream
Tssr66317 transcription start site region 66317 564 bp downstream
Tssr66318 transcription start site region 66318 523 bp downstream
Tssr66319 transcription start site region 66319 495 bp downstream
Tssr66320 transcription start site region 66320 471 bp downstream
Tssr66321 transcription start site region 66321 447 bp downstream
Tssr66322 transcription start site region 66322 431 bp downstream
Tssr66323 transcription start site region 66323 393 bp downstream
Tssr66324 transcription start site region 66324 340 bp downstream
Tssr66325 transcription start site region 66325 299 bp downstream
Tssr66326 transcription start site region 66326 289 bp downstream
Tssr66327 transcription start site region 66327 269 bp downstream
Tssr66328 transcription start site region 66328 251 bp downstream
Tssr66329 transcription start site region 66329 212 bp downstream
Tssr66330 transcription start site region 66330 199 bp downstream
Tssr66331 transcription start site region 66331 185 bp downstream
Tssr66332 transcription start site region 66332 152 bp downstream
Tssr66333 transcription start site region 66333 117 bp downstream
Tssr66334 transcription start site region 66334 111 bp downstream
Tssr66335 transcription start site region 66335 100 bp downstream
Tssr66336 transcription start site region 66336 86 bp downstream
Tssr66337 transcription start site region 66337 70 bp downstream
Tssr66338 transcription start site region 66338 within coordinates
Tssr66339 transcription start site region 66339 28 bp upstream
Tssr66340 transcription start site region 66340 73 bp upstream
Tssr66341 transcription start site region 66341 118 bp upstream
Tssr66342 transcription start site region 66342 180 bp upstream
Tssr66343 transcription start site region 66343 212 bp upstream
Tssr66344 transcription start site region 66344 357 bp upstream
Tssr66345 transcription start site region 66345 390 bp upstream
Tssr66346 transcription start site region 66346 446 bp upstream
Tssr66347 transcription start site region 66347 484 bp upstream
Tssr66348 transcription start site region 66348 525 bp upstream
Tssr66349 transcription start site region 66349 549 bp upstream
Tssr66350 transcription start site region 66350 577 bp upstream
Tssr66351 transcription start site region 66351 585 bp upstream
Tssr66352 transcription start site region 66352 621 bp upstream
Tssr66353 transcription start site region 66353 695 bp upstream
Tssr66354 transcription start site region 66354 709 bp upstream
Tssr66355 transcription start site region 66355 736 bp upstream
Tssr66356 transcription start site region 66356 753 bp upstream
Tssr66357 transcription start site region 66357 767 bp upstream
Tssr66358 transcription start site region 66358 779 bp upstream
Tssr66359 transcription start site region 66359 805 bp upstream
Tssr66360 transcription start site region 66360 817 bp upstream
Tssr66361 transcription start site region 66361 843 bp upstream
Tssr66362 transcription start site region 66362 875 bp upstream
Tssr66363 transcription start site region 66363 892 bp upstream
Tssr66364 transcription start site region 66364 925 bp upstream
Tssr66365 transcription start site region 66365 945 bp upstream
Tssr66366 transcription start site region 66366 965 bp upstream
Tssr66367 transcription start site region 66367 993 bp upstream
Tssr66368 transcription start site region 66368 1015 bp upstream
Tssr66369 transcription start site region 66369 1049 bp upstream
Tssr66370 transcription start site region 66370 1091 bp upstream
Tssr66371 transcription start site region 66371 1516 bp upstream
Tssr66372 transcription start site region 66372 1679 bp upstream
Tssr66373 transcription start site region 66373 1969 bp upstream
Tssr72201 transcription start site region 72201 1648 bp upstream
Tssr72202 transcription start site region 72202 791 bp upstream
Tssr72203 transcription start site region 72203 411 bp upstream
Tssr72204 transcription start site region 72204 176 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory