rs216764110 SNP Detail

Summary

• ID
  rs216764110
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108692683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGACCCG GTTCCCTATT
  CCCCCAAGAG ATGCAGAAAA AAGAGCAAAT GAAAGGTAGA CCTTTTGCTA GGTCACCAAC
  AGTTGGTTTT GGTGTGGCTC AGCTAGTGTG TTGGAAGAAA CTGATTTCTT TAGAGCGATG
  GATCAGTGGT TATCAATGAA GGTTAGGAAG TAAGGACCCC CAACTCCGTG TATTACCAGC
  Y
  CTATTTCTAA ACTTGAACAC CTTCTCATCA GTTGGGTTTT TTGTTTGTTT GTTTTGGCAG
  CTGAATTGAC TAACTGGTTG AGTTATAAAT GGATTCCAGC CCTGCTTTGG ATGGTTTGTG
  TTATGACCTT TACTGTATGG GATTTTTCTG ATGCTGGTGG TGTGTGTGTG CTTCAGTGTG
  GTGTCTGCCC GCCTGTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362789964	MGP_WTSI_4_108508091	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216764110					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362789964	MGP_WTSI_4_108508091	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108692683 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	1872 bp upstream
Cpgi14564	CpG island 14564	1347 bp distal
Cpgi14565	CpG island 14565	346 bp distal
Rr376990	regulatory region 376990	419 bp downstream
Rr597224	regulatory region 597224	1943 bp distal
Rr597225	regulatory region 597225	1382 bp distal
Rr597226	regulatory region 597226	875 bp distal
Tssr38313	transcription start site region 38313	869 bp downstream
Tssr38314	transcription start site region 38314	781 bp downstream
Tssr38315	transcription start site region 38315	735 bp downstream
Tssr38316	transcription start site region 38316	679 bp downstream
Tssr42738	transcription start site region 42738	1889 bp upstream
Tssr42739	transcription start site region 42739	1860 bp upstream
Tssr42740	transcription start site region 42740	1232 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	within coordinates