rs216764878 SNP Detail

Summary

• ID
  rs216764878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101901327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGCATGT TTGTTTGAGA
  ATCAATTGAG GGGCATCGTG GTAGGAACAG GGTGGAAAGA ACATGGGGTA AAAATAGATT
  GAAAGACTGG GTTGGCAACC TGGGATCACA CTCTGTCTCC TGAGCTCTGA ATGCCTTGGG
  TTTGCCTCAC CTTTGTCCAG GAGGGAGAAC TTTCTCAGAT ATCTGTCTGA TGGAATATAG
  R
  ACTATTCGAT CTGAAGCATC CAGTGGAGGA GTTAAAAATC CTAGGACTAA GTTTCAGAAG
  ACCCTGAACT CTGGACTCTG CCAGTCAGAC TAGAACAATC TTAGGCCACG ACCTTACCCA
  TTTCTGAGTC TCAGCTTCCC CCACTGGAAA ACAAGGGGTT GGAGCAGATG ATACCCTTTG
  GCTCTGACCT TCTGTGATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353678	CHEV_7_109400634	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216764878					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101901327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	1136 bp distal
Rr652563	regulatory region 652563	1507 bp distal
Rr652564	regulatory region 652564	1178 bp distal
Tssr2354	transcription start site region 2354	1844 bp downstream
Tssr68330	transcription start site region 68330	1865 bp downstream
Tssr73944	transcription start site region 73944	1997 bp upstream
Tssr73945	transcription start site region 73945	1982 bp upstream
Tssr73946	transcription start site region 73946	1786 bp upstream
Tssr73947	transcription start site region 73947	1641 bp upstream
Tssr73948	transcription start site region 73948	1605 bp upstream
Tssr73949	transcription start site region 73949	1572 bp upstream
Tssr73950	transcription start site region 73950	1525 bp upstream