rs216768006 SNP Detail

Summary

• ID
  rs216768006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112640359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCG CTCGGCCACT TCCTGCTCCT
  R
  CTCCGAGGCG CGGCGCGGCC GGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss643253192	FVB_NJ_12_113912136	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	A	A	A	A	G	G	A	A	A	A	A	G	G	G	A	A	G	A	A	G	A	A	A	A	A	G	G	A	A	A	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs216768006					SNP	A	G	G	A	A	A	A	G	G	A	A	A	A	A	G	G	G	A	A	G	A	A	G	A	A	A	A	A	G	G	A	A	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss643253192	FVB_NJ_12_113912136	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112640359 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Akt1	thymoma viral proto-oncogene 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi5173	CpG island 5173			within coordinates
Gm30150	predicted gene, 30150			563 bp upstream
Rr369631	regulatory region 369631			1505 bp upstream
Rr473551	regulatory region 473551			1871 bp distal
Rr473552	regulatory region 473552			996 bp distal
Rr473553	regulatory region 473553			within coordinates
Rr473554	regulatory region 473554			341 bp proximal
Rr473555	regulatory region 473555			454 bp proximal
Rr473556	regulatory region 473556			497 bp proximal
Rr473557	regulatory region 473557			1057 bp proximal
Rr473558	regulatory region 473558			1522 bp proximal
Rr473559	regulatory region 473559			1713 bp proximal
Rr473560	regulatory region 473560			1959 bp proximal
Tssr115391	transcription start site region 115391			487 bp upstream
Tssr117876	transcription start site region 117876			1881 bp upstream
Tssr117877	transcription start site region 117877			91 bp downstream
Tssr117878	transcription start site region 117878			150 bp downstream
Tssr117879	transcription start site region 117879			268 bp downstream
Tssr117880	transcription start site region 117880			418 bp downstream
Tssr117881	transcription start site region 117881			449 bp downstream
Tssr117882	transcription start site region 117882			828 bp downstream
Tssr117883	transcription start site region 117883			849 bp downstream
Tssr117884	transcription start site region 117884			901 bp downstream