rs216775715 SNP Detail

Summary

• ID
  rs216775715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57277531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCCGCGGC TCCTCAGGTA ACGGCGTGGA
  CCGGGAGCGG CTGGGGGAGG GGGGAGAACC TCAGGGTGGC CTGCAGCCCG CCCGGGACTT
  CCGGCCGCGG CCCCTGGAGG TGCAGGAGCG CTGCGTGGCC CGCGTCGCGG CGTCCTCAGG
  Y
  GACAACACCG CTCCTTCTCC AGGTTTCGGC CTCATGGCGT CATAGTCTTT CAAAAGTTAA
  GAAGGGACGA ACAATGACTC GGAAGTGTGG GCTGTTTTTC CTCTAAGCTT TGACGAGTTA
  GGGTTTCAGT CCTGGCGGGA CCGCGGATCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324050328	CHEV_12_58331732	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216775715					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57277531 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	within coordinates
Mipol1	mirror-image polydactyly 1	within coordinates
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	within coordinates
Rr265473	regulatory region 265473	within coordinates
Rr403305	regulatory region 403305	67 bp downstream
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113519	transcription start site region 113519	285 bp downstream
Tssr113520	transcription start site region 113520	242 bp downstream
Tssr113521	transcription start site region 113521	181 bp downstream