rs216784471 SNP Detail

Summary

• ID
  rs216784471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87677759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTCCAAG CTGTTTGTGT
  ATAATACTTA CTAATATTGT GTATAATACT GATATATAAT AATTACTAAT ATTATTATTA
  TTATAATCCA GGTGAGAGAC AGGCAATGCT GTTTAACAGT TGTTCTGATG ATAAACTGGG
  CAGAGCTCAG GTGCAGTGGA TGGCAACAGT GTTTCAGAGA AGGAAATACG AAGTTGGACT
  R
  CGGTACCATA AAATGTCCAG CAGAGGGCAG TAAAAACCAA CGCAAGGTCA GGCGGCATAA
  GACCCATCAT TTTTGAAGCC TTGGAAATTA CCTGATCTTT CTCATTTAAA TGACCAATGA
  GGGCAACTGA GGTGCAGAAA GAAAGTGAGA CATATGTGTG GCTCCACTTG TGCTCAGATG
  TTCTGCTCCA TGTTCTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358783633	MGP_WTSI_3_87574374	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216784471					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358783633	MGP_WTSI_3_87574374	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87677759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13336	CpG island 13336	1257 bp distal
Pear1	platelet endothelial aggregation receptor 1	1497 bp upstream
Rr579542	regulatory region 579542	1520 bp distal
Rr579543	regulatory region 579543	1009 bp distal
Rr579544	regulatory region 579544	1289 bp distal
Rr579545	regulatory region 579545	within coordinates
Rr579546	regulatory region 579546	13 bp proximal
Rr579547	regulatory region 579547	668 bp proximal
Tssr33952	transcription start site region 33952	1492 bp upstream
Tssr33953	transcription start site region 33953	1477 bp upstream
Tssr33954	transcription start site region 33954	1384 bp upstream