rs216795822 SNP Detail

Summary

• ID
  rs216795822
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:84103896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCATGGAC CGCCGCGCCC
  GGGCCGCTCA GCTGGCGGCG GCGGCGGCCG CACGGGCCGC TCCCGGGCCG CCGGGCTGCG
  GGCGGAGCGC GCGGGGCCTG GGCGCCGAGC CCGGAGTCAT CCCCGGCGCG GGCCGCGGGC
  GCAGCGGCGG GCGCTCGGAA GGCCGGCCCG CGGCCCGCGC TCCATGCCGC TGGCGCTGTG
  M
  TGGGCGGGCG CTGTCCGGGC GCCGCCGGGC GCTCCCGCGC CTTCCTGGGC GAGCCGCGAG
  TCTCCGCGCG CAACTTTCTC GGCCCCTCTC TGCTGGCGGT GGGGGTCGCG GCGGGCGCTG
  CTAGTGCGCG GGTCGCAGCT CTCTCATTGT GCGCCAGCGA GGCCGACCGG CTGTCCTTTC
  CTCCCCGCAC TTAGTCTAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss401475709	MGP_WTSI_18_84255163	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	C	A	A	C	C	C	A	A	C	A	C	A	C	A	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs216795822					SNP	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	C	A	A	C	C	C	A	A	C	A	C	A	C	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401475709	MGP_WTSI_18_84255163	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:84103896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10336	CpG island 10336	within coordinates
Cpgi10337	CpG island 10337	1450 bp proximal
Gm56504	predicted gene, 56504	795 bp downstream
Gm58899	predicted gene, 58899	1906 bp upstream
Rr353212	regulatory region 353212	within coordinates
Tshz1	teashirt zinc finger family member 1	within coordinates
Tssr152202	transcription start site region 152202	1876 bp upstream
Tssr154120	transcription start site region 154120	199 bp downstream
Tssr154121	transcription start site region 154121	486 bp downstream
Tssr154122	transcription start site region 154122	608 bp downstream
Tssr154123	transcription start site region 154123	641 bp downstream
Tssr154124	transcription start site region 154124	678 bp downstream
Tssr154125	transcription start site region 154125	975 bp downstream
Tssr154126	transcription start site region 154126	1931 bp downstream