rs216797814 SNP Detail

Summary

• ID
  rs216797814
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113062364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACCACCA ACGAAAGCTC
  TAGTGTGCTT TTTGTTGCTG TAATAAAAAC ACTGGCCAGG CATGGTGGCG CACGCCTTTA
  ATCCCAGCAC TCGGGAGGCA GAGGCAGGTG GATTTCTGAG TTCGAGGCCA GCCTGGTCTA
  CAAAGTGAGT TCCAGGACAG CCAGGGCTAT AGAGAAACCC TGTCTCAAAA AAACAAAAAA
  M
  AAAAAACAAT AATAATAATA ATAATAATAA CAAAATAAAA ATAAATAAAA ACACTGACCA
  CAAGCAACTT AGACAGGAAA GGACTTAATT CAGCTGATGT GTTTACAATC CATCACTCAG
  AAAAGCGAAA ATGGGAACTC GGAGGCAGAG ACCACAGAAA TGCTGCTCAC GGGTTTCTAT
  AGCTCCATCA CCCAGTGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss390012618	MGP_WTSI_13_113716038	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	A	C	C	A	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs216797814					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	A	C	C	A	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390012618	MGP_WTSI_13_113716038	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113062364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6101	CpG island 6101	1119 bp proximal
Dhx29	DExH-box helicase 29	1624 bp upstream
Mtrex	Mtr4 exosome RNA helicase	within coordinates
Rr280952	regulatory region 280952	36 bp proximal
Rr369777	regulatory region 369777	1461 bp upstream
Tssr121155	transcription start site region 121155	1812 bp upstream
Tssr124081	transcription start site region 124081	1526 bp downstream
Tssr124082	transcription start site region 124082	1633 bp downstream
Tssr124083	transcription start site region 124083	1768 bp downstream