rs216797871 SNP Detail

Summary

• ID
  rs216797871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12656000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAGGGGA GAGGGTGGGG
  CCCGTGCTTG TGAACCCGGA TCGGTGGTAA CCACAGGACC CGACTCCATT ATTTTGGTGA
  GAAAATGTGA GCCGAGCTGG TTGCCCTAGC TAAGAATCCA CCGTCCATGG TTCCTGGGTT
  TTGCAGCCTA ATTACGGAGA GCGTGGACTG GACGTCAGCA CTACTTAGAT ATGGCGGCGT
  Y
  GGTCTCACCA AAGTTTCTGC GCATGTGCGC CGACTCAGAA GCCTAGCTAG TACTTCAGAG
  GTCCGCCAGA AGACGGGCGT GGCGCTGTTT CTAAAAGTGC GCATGCTTTA CCCGGCTCAA
  AGGGCGCCTC TCATCCTAGC GCTTGATTGG TTGGTGAGCA CGCTGTTTTC ATCTGCGCGT
  GCGTCTCTAC CTCTGACCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322106840	CHEV_7_13507422	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216797871					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12656000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	within coordinates
Gm57203	predicted gene, 57203	within coordinates
Rps5	ribosomal protein S5	223 bp upstream
Rr368230	regulatory region 368230	within coordinates
Rr642402	regulatory region 642402	within coordinates
Rr642403	regulatory region 642403	18 bp proximal
Rr642404	regulatory region 642404	303 bp proximal
Tssr64485	transcription start site region 64485	242 bp upstream
Tssr64486	transcription start site region 64486	881 bp upstream
Tssr70626	transcription start site region 70626	within coordinates