rs216803254 SNP Detail

Summary

• ID
  rs216803254
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55064717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC AGTAAGCACT TCCCCTCCCC
  T
  ATGCTCTGGA AGTCCAATAA TTTCA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319727209	CHEV_1_55082402	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216803254					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55064717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	1262 bp proximal
Gm71172	predicted gene, 71172	1496 bp upstream
Rr371303	regulatory region 371303	645 bp upstream
Rr411122	regulatory region 411122	265 bp proximal
Rr411123	regulatory region 411123	1006 bp proximal
Rr411124	regulatory region 411124	1507 bp proximal
Rr411125	regulatory region 411125	1913 bp proximal
Rr411126	regulatory region 411126	1960 bp proximal
Sf3b1	splicing factor 3b, subunit 1	within coordinates
Tssr6707	transcription start site region 6707	791 bp upstream
Tssr11707	transcription start site region 11707	1738 bp upstream
Tssr11708	transcription start site region 11708	1819 bp downstream
Tssr11709	transcription start site region 11709	1915 bp downstream