rs216807851 SNP Detail

Summary

• ID
  rs216807851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64698060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGTCCT GAGTTCAAAT
  CCCAGCAACC ACATGGTGGC TCACAAACAT CCGTAATGAG ATCTGACTCC CTCTTCTGGG
  GTGTCTGAAG ACAACTACAG TGTACTTACA TATAATAAGT AAATAAATCT TTGAAAAAAA
  AAAAGAATAT TGCCTTGAGT AGTGTGGGGA AAACATGAAC TAAGGAGGCC GGCTGGAGCT
  Y
  GGTGCCTATT CTCGGACTCT CTCCTGCTGT GGACTTGGGT AATCTGTAAC TACTCTGGAA
  CCCAGTTTCC TCATCACTTG CTCTATTTTT GGGTCAAACT GCACGGACGC TGCCTGTGCA
  TGCTGCATGA TTTCCCAACT CACTCTCCTT GTCTTTATAG TTACTTCTCT AACATGATCT
  TCCAGCCTGG CTGGTAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322985865	CHEV_9_64638585	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216807851					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64698060 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	1046 bp downstream
Rr681316	regulatory region 681316	924 bp distal
Rr681317	regulatory region 681317	within coordinates
Rr681318	regulatory region 681318	486 bp proximal
Rr681319	regulatory region 681319	1289 bp proximal
Tssr2909	transcription start site region 2909	16 bp downstream
Tssr85622	transcription start site region 85622	1121 bp downstream
Tssr85623	transcription start site region 85623	1101 bp downstream
Tssr85624	transcription start site region 85624	178 bp upstream
Tssr90157	transcription start site region 90157	44 bp downstream