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rs216810401 SNP Detail
Summary
  • ID
    rs216810401
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr17:31095675 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAACCTCAGA GGAAACTGAC
    ATTCCTTCTG GAAGTAGAAT ATAGTGATAA CCTCTGATAA GTCCCTAACG CTATTGCTTC
    CTCTCTGCTG CTGGCCAAAA GCACCTTAGG GGAAGACAGG TTTCATTTGG ATTACAGTTC
    CAGGTCACAC AGTCCATCAC TGAGGGGAGT CATAGTAGGA AGTGTTCCTA CTCGAACCAT
    S
    CATGATCATT GCCTGCCTCT GTGGCTTCTT CACAGGCTCA TGCTTGCTTT AGATAGTTTT
    CTCAGACAGC TCAAGACCAC TTGCCTAGGG ATGGCACCGC CCACAGTGGG CAGACCTCAA
    AACAAATGTC TATAGACCAG CTTGATAAAG ACTCCATGAC ATTTTTGATT GTTTGTTTGT
    TTGAATTTCA GGTGATTCTA                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss325357670 CHEV_17_31013646 CHEVERUD SCREENING_POP f SNP G C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs216810401 SNP G C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:31095675 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi8937 CpG island 8937 1989 bp distal
Dnah8 dynein, axonemal, heavy chain 8 939 bp downstream
Gm9937 predicted gene 9937 1417 bp upstream
Gm50252 predicted gene, 50252 within coordinates
Rr330583 regulatory region 330583 1875 bp distal
Rr334765 regulatory region 334765 1726 bp proximal
Rr337287 regulatory region 337287 865 bp proximal
Rr341200 regulatory region 341200 1675 bp distal
Tssr147267 transcription start site region 147267 1665 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory