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rs216811074 SNP Detail
Summary
  • ID
    rs216811074
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr4:141390465 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTACTGGAAT TAACAGGATA
    GGAGAGAATC AATTCTCAAA AGTTGACCTC TGACCTCCAC TCTCCCATTT ACATACGGAC
    ACACACACAG CTCCTAAAGT ATAGTTACAC ACACACACAC ACACACACAC ACAGAAAAAG
    CATGAAGGCA GGCTAGTCAA TCTTCCCCAC TCCTCTATTT TTCGGTTTCA CTATGTAGTC
    M
    AGGCTAGCTT GGACCTCAGG ACTCTGCTTT AGCCTCCTGT GTGCTGGATG ACAGAGATGC
    ATCACCACAC CCAGCCTTCT GAGGCTGGCC TGTCTCCTCA CCCCTGTGCG TGCCCTTGAC
    AGGTAGTCAT TCCTACCAGG AATTGGGGCA ATGACCAATA CTAACAAGCC CCAACCCAAA
    GTGTCATAGT GTCACCGTCC                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss363526244 MGP_WTSI_4_141219069 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216811074 SNP C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss363526244 MGP_WTSI_4_141219069 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:141390465 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi15240 CpG island 15240 30 bp proximal
Gm54266 predicted gene, 54266 941 bp upstream
Plekhm2 pleckstrin homology domain containing, family M (with RUN domain) member 2 within coordinates
Rr603850 regulatory region 603850 451 bp proximal
Rr603851 regulatory region 603851 954 bp proximal
Rr603852 regulatory region 603852 1054 bp proximal
Rr603853 regulatory region 603853 1735 bp proximal
Tssr40091 transcription start site region 40091 1033 bp upstream
Tssr40092 transcription start site region 40092 1087 bp upstream
Tssr44355 transcription start site region 44355 845 bp downstream
Tssr44356 transcription start site region 44356 909 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory