rs216817678 SNP Detail

Summary

• ID
  rs216817678
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108463397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGTCCCT TTTCCATAAG
  GGGTGATGGG TGGCAAAGTA AAAAAAATAA TAACCATTAG TAGAAAATTT CTGGAGCTGT
  AATTTGTATT TATCCCAGTC CTAATTGGCT TTCAATAAAC AAATACTGAG GAAAGTCCCC
  CGCCTGCTCC AGAATCCAAT TGGCTCAGAC ATGCCCTCAG GGCTTGAGTG GTTAACCTGA
  W
  AACCTCAGAA TGAAGAACTT CACCAAAAAT GCCAAATGAC ACTTTTTTTT TCTTTTTTGT
  TTTGTTGAGA CAGGGCTTCT CTGTGTAACA GCACTGGCTG TCCTGGAACT CTGTAGACAA
  GGGTGATCTC AAACTCACAA AGATCCTCCA AATGCTGGGA TTAAAGGCGG GTGCCACCAT
  GGCTGGGACA CTTGTCTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359167717	MGP_WTSI_3_108358999	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216817678					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359167717	MGP_WTSI_3_108358999	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108463397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13704	CpG island 13704	1210 bp distal
Gm43435	predicted gene 43435	within coordinates
Gm65135	predicted gene, 65135	1266 bp upstream
Rr367531	regulatory region 367531	1135 bp downstream
Rr583260	regulatory region 583260	1277 bp distal
Rr583261	regulatory region 583261	776 bp distal
Rr583262	regulatory region 583262	1197 bp distal
Rr583263	regulatory region 583263	1841 bp proximal
Scarna2	small Cajal body-specific RNA 2	1679 bp upstream
Tmem167b	transmembrane protein 167B	344 bp downstream
Tssr31256	transcription start site region 31256	1421 bp downstream
Tssr35152	transcription start site region 35152	1328 bp upstream