rs216823225 SNP Detail

Summary

• ID
  rs216823225
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:111258209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTGGAAG CCAGTCTTGT
  CACTGATTGC ATGACACGAA TTCTCTTTTG TAAGATAAAA CATTCTTTAA CCATTAGCTC
  CACCTCATTA CCAGCAATTT CCATGTTTAA GTTTTTTTTT TTTTCCTTAA AGACTGAGAT
  AAATAGCACC TGTCCCTGCA GGACACTTGA GTGACGATAC CCATGTGCTT CATTTCATGT
  S
  TTCATCTCCA GTGGTCCGGA GCGCCAAGCC TTGCACATAT GACATTGCAA CACAAATCCT
  GCCCTGTTCC TCTAAGCAGA AGTCACGCTG ACAAAAGCCA AGGAATTACA TAATTATCAG
  TGTTGCTTGC TAGATAATTG TTCTTTTTAA ATGCTTTACT CAAAATAGTT TTTCTTTCTT
  TATTCTTCTT CTTCTTCCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323196676	CHEV_9_111331645	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216823225					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:111258209 () rs orientation: forward

Symbol	Name	Function Class
Rr192826	regulatory region 192826	609 bp distal
Rr198795	regulatory region 198795	within coordinates
Rr202628	regulatory region 202628	859 bp distal
Rr202629	regulatory region 202629	746 bp distal