rs216830247 SNP Detail

Summary

• ID
  rs216830247
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172527109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAC CTATCATCTA TCAATCAATC
  W
  ATCAATCAAT CAATCTATCT ATCTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320126988	CHEV_1_174629673	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216830247					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172527109 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Crp	C-reactive protein, pentraxin-related			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
D1Mit149	DNA segment, Chr 1, Massachusetts Institute of Technology 149			212 bp distal
D1Mit149.1	DNA segment, Chr 1, Massachusetts Institute of Technology 149.1			305 bp distal
Rr423653	regulatory region 423653			1770 bp distal
Rr423654	regulatory region 423654			1477 bp distal
Tssr10246	transcription start site region 10246			1479 bp downstream
Tssr10247	transcription start site region 10247			531 bp downstream
Tssr10248	transcription start site region 10248			476 bp downstream
Tssr10249	transcription start site region 10249			448 bp downstream
Tssr10250	transcription start site region 10250			396 bp downstream
Tssr10251	transcription start site region 10251			342 bp downstream
Tssr10252	transcription start site region 10252			281 bp downstream
Tssr10253	transcription start site region 10253			226 bp downstream
Tssr10254	transcription start site region 10254			163 bp downstream