rs216844899 SNP Detail

Summary

• ID
  rs216844899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56265342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCCTGAA AGGTTTCCTA
  GCTGTTTAGC CTGCTGAGTC TCTCGTGCCT TTGGAGTTAG CTCACCAGCA AATCCTCCAG
  CCGGGGCCGG TTCTATCCCA CTGGCCAGGT GAGGTGCAGG GCCTGCCCTC CCGAGTGCTG
  CAGCAGGTGA GGGGCAGGGA GAGCTTTCTT GTTCTGATGA CCCCAAGGCC AGGGCTTCCA
  Y
  CTGCCCTGGT GGTGAAGGAT AGAGGGTAAG AGGGTAGGAG GTTGTCTCTC TCCCTCATCC
  ATGCCACCAC ATAGAAGATG AGCAGTAGGG CCAGCTCTCT CACAATGCCC CGGTAAGGGG
  GTAGAGCCAG TTCCACACAG TCTTCAGACA TCAATAGGTA GTAGATCAGA CCAGGGACAT
  CTGCCTGTTC TTTGGTGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325856833	CHEV_19_56351400	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216844899					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56265342 () rs orientation: forward

Symbol	Name	Function Class
Gm22271	predicted gene, 22271	608 bp downstream
Gm32257	predicted gene, 32257	within coordinates
Rr549993	regulatory region 549993	442 bp proximal
Rr549994	regulatory region 549994	672 bp proximal
Rr549995	regulatory region 549995	1092 bp proximal
Rr549996	regulatory region 549996	1118 bp proximal
Rr549997	regulatory region 549997	1182 bp proximal