rs216845115 SNP Detail

Summary

• ID
  rs216845115
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115436162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCACAC AGGCCACACC
  AGACATCAAA ATATTTTCAG TGCGGAAGGT GGTGGGGTCC TACGGAGGAA GTTGGGTGGA
  GAGACATTCC CTGCTTGCAC TCGGCGGTGA ACCTGGCTAA GGCTGCAGAG CATTGCAGAT
  CCAAAACCGC AGCTGCTGGT GCTGCGGATC TAACGTCTTT TCGGGCGGGG GTGGGGGTGG
  K
  GGTGGTGGGA GCTCATCAAC TCGAAAAACT TTATGAAAAC CTGACGCGTG GGAAAAGAAC
  AAAGGAAAGT CGAGAGGCTC ATGTATATCA AAGGAAAGGG ACTCGGAGAA ATACTGGGGG
  GGGGGGGGGG GAGGAAAAAT TCATCCCTAA ATGCTTCCGA ATCCTAGATG CTGAAGCAGC
  CTCCTCCGTC GATGCAGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss359332262	MGP_WTSI_3_115345431	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T	G	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs216845115					SNP	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T	G	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359332262	MGP_WTSI_3_115345431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115436162 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	917 bp upstream
Rr65099	regulatory region 65099	1362 bp distal
Rr367536	regulatory region 367536	75 bp downstream
Rr367537	regulatory region 367537	215 bp upstream
Rr397953	regulatory region 397953	1979 bp upstream
Tssr35264	transcription start site region 35264	982 bp upstream
Tssr35265	transcription start site region 35265	959 bp upstream