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rs216864658 SNP Detail
Summary
  • ID
    rs216864658
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:82959851 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCACACTGAC GAGCCTGTAG
    AGCAATTTGC TTTTGGGTTT TAGAGGGTTA TAGTCCATGT TGACAGAAGA ACTGAAAGCT
    CACATCTTGA ATCAGAGAGA GAGATAGAGC TAACTGGGAA TGGGTGAGTT ATTGCAGTTG
    GTCTCACGGT ATGGAAGATG CTCTCTCTTG CTTCACTCTC ATTCTTTTAT TTACTTATTT
    R
    TTTTTTAAAA GATTTATTTA CTATTATTCA TAAGTACACT GTAGCTGTCT TCAGACTCAC
    CAGAAGAGGG CGTCAGATTT CATTAAGGGT GGTTATGAGC CACCATGTGG TTGCTGGGAC
    TGGAACTCAA GACCTTCAGA AGAGCAGTCA GTGCTCTTAC CTGCTGAGCC ATCTCACCAG
    CCCCCTTTGC TCTTATTCTA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384064637 MGP_WTSI_11_82882527 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216864658 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss384064637 MGP_WTSI_11_82882527 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:82959851 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D11Pas76 DNA segment, Chr 11, Pasteur Institute 76 765 bp distal
Gm20234 predicted gene, 20234 1038 bp upstream
Rr452895 regulatory region 452895 1774 bp distal
Rr452896 regulatory region 452896 1440 bp distal
Rr452897 regulatory region 452897 511 bp distal
Rr452898 regulatory region 452898 56 bp proximal
Slfn2 schlafen 2 within coordinates
Tssr103642 transcription start site region 103642 605 bp downstream
Tssr103643 transcription start site region 103643 253 bp upstream
Tssr103644 transcription start site region 103644 302 bp upstream
Tssr103645 transcription start site region 103645 483 bp upstream
Tssr103646 transcription start site region 103646 552 bp upstream
Tssr103647 transcription start site region 103647 721 bp upstream
Tssr103648 transcription start site region 103648 791 bp upstream
Tssr103649 transcription start site region 103649 836 bp upstream
Tssr109640 transcription start site region 109640 1734 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory