rs216868435 SNP Detail

Summary

• ID
  rs216868435
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98853214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAA GAAAAACAAA ACAAAACAAA
  W
  CAATATAACC CACAAACAAA GAATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss922986061	MGP_WTSI_15_98955333	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	T	T	T	A	A	T	T	T	T	T	T	T	A	A	T	A	T	T	T	T	A	A	T	T	T	T	T	T	A	T	T	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs216868435					SNP	A	A	A	A	T	T	T	A	A	T	T	T	T	T	T	T	A	A	T	A	T	T	T	T	A	A	T	T	T	T	T	T	A	T	T	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922986061	MGP_WTSI_15_98955333	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98853214 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	48 bp upstream
Cpgi7685	CpG island 7685	1617 bp distal
Gm49450	predicted gene, 49450	1782 bp upstream
Gm56698	predicted gene, 56698	within coordinates
Rr404613	regulatory region 404613	1562 bp downstream
Rr509237	regulatory region 509237	1793 bp distal
Rr509238	regulatory region 509238	1673 bp distal
Rr509239	regulatory region 509239	1140 bp distal
Rr509240	regulatory region 509240	within coordinates
Tssr132971	transcription start site region 132971	1564 bp downstream
Tssr136334	transcription start site region 136334	1814 bp upstream
Tssr136335	transcription start site region 136335	1800 bp upstream
Tssr136336	transcription start site region 136336	1773 bp upstream
Tssr136337	transcription start site region 136337	1742 bp upstream
Tssr136338	transcription start site region 136338	1726 bp upstream
Tssr136339	transcription start site region 136339	1674 bp upstream
Tssr136340	transcription start site region 136340	1657 bp upstream
Tssr136341	transcription start site region 136341	1634 bp upstream
Tssr136342	transcription start site region 136342	126 bp downstream
Tssr136343	transcription start site region 136343	1814 bp downstream
Tuba1a	tubulin, alpha 1A	1832 bp upstream