rs216872153 SNP Detail

Summary

• ID
  rs216872153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85391649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCC GACCCAGTTT TGTAGTAGGC
  Y
  GCCAGTATGT GTATGCCCAC AACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SPRET/EiJ
ss919441526	MGP_WTSI_8_84665020	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SPRET/EiJ
rs216872153					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919441526	MGP_WTSI_8_84665020	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85391649 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	within coordinates
Cpgi20702	CpG island 20702	1847 bp distal
Cpgi20703	CpG island 20703	509 bp distal
Cpgi20704	CpG island 20704	within coordinates
Gm26664	predicted gene, 26664	within coordinates
Gm50464	predicted gene, 50464	221 bp upstream
Rr368565	regulatory region 368565	820 bp downstream
Rr368566	regulatory region 368566	within coordinates
Rr401023	regulatory region 401023	1963 bp downstream
Rr666565	regulatory region 666565	1676 bp distal
Rr666566	regulatory region 666566	782 bp distal
Rr666567	regulatory region 666567	within coordinates
Rr666568	regulatory region 666568	125 bp proximal
Tssr2627	transcription start site region 2627	78 bp upstream
Tssr78425	transcription start site region 78425	782 bp downstream
Tssr78426	transcription start site region 78426	763 bp downstream
Tssr78427	transcription start site region 78427	455 bp downstream
Tssr82109	transcription start site region 82109	1949 bp upstream
Tssr82110	transcription start site region 82110	1065 bp upstream