rs216872695 SNP Detail

Summary

• ID
  rs216872695
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65517746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agaggccat ggagggatgt tccttactgg
  cttgcttccc ctggcttgct tagcctactc tcttatagaa cccaagactg ccagcccagg
  gatggtccca cccacaaggg gcctttcccc cttgatcact aactgagaaa ataccccaca
  R
  ctggatctca tggaggtatt tccccaactg aagttccttt ctctgtgata accccagctg
  tgtcaagttg acacaaaact agccagtaca GCATCCATTA GTAGGAACCT GATGACATAT
  GTCTAAACAA TAGAATTGTC TTATAGTTTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325657194	CHEV_18_65544329	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216872695					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65517746 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk2	alpha-kinase 2			Intron
				Noncoding-Transcript-Variant
D18Mit182	DNA segment, Chr 18, Massachusetts Institute of Technology 182			531 bp proximal
Rr539523	regulatory region 539523			1602 bp distal
Rr539524	regulatory region 539524			1687 bp proximal
Tssr151599	transcription start site region 151599			1963 bp downstream
Tssr151600	transcription start site region 151600			1350 bp upstream
Tssr151601	transcription start site region 151601			1380 bp upstream