rs216879570 SNP Detail

Summary

• ID
  rs216879570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156082005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTG TCTTATTAGG
  TTTTACATTT AATTATTTTT TGAAATGCAA GGACAATTTT ATTAGAGTTT GGAAGAAAAA
  TAACCCAGGG AGGACAAACT GAAAATCTCA GCAGTTGCCC TAACCCTAAC CTCAAGTGGA
  ACATGCCAGG AAGGAAAAAA GCCATGCCAT TTGAGTTACT GGCAGGGAGG TCCACCACAT
  R
  GCAGCAGGCA GCCACATAAC AGGGAGAAAA GGTGTAAGAA GAGGGTCTGA TGTTAACCCT
  GTTTCTCAAT TGGTCCCTGA TTTGTTAATA AAGAAGGCTG GGGGGGCCAA TTGTTGGGAG
  CGGTGGGCAG AGGTGGGACT TCTGGGCCCC AGGAGGAAAA GGCAGACTTA AGGAAGGAGA
  GGGGCTTTTT TGTCATGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444440	CHEV_4_155371657	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216879570					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156082005 () rs orientation: forward

Symbol	Name	Function Class
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40753	transcription start site region 40753	1192 bp downstream
Tssr44989	transcription start site region 44989	1902 bp downstream