rs216882324 SNP Detail

Summary

• ID
  rs216882324
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122521658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCAGACA CTCCAGAAGA
  GGGAGTCAGA TCTTGTTATG GATGGTTGTG AGCCACCATG TGGTTGCTGG GATTTGAACT
  CCTGACCTTC GGAAGAGCAG TCGGGTGCTC TTACCCACTG AGCCATCTCA CCAGCCCCCG
  AAGGAAGAAC TCTTAACCAC TCAGCCAGAA TGAAGTGTCA ATATGAACTT TGGAGGGAGC
  R
  GGCACAAACA GTTAAGGCCC AATTTCTAGC TATTATCCCA GAGTTCAGTT TTAAATCAGG
  TGACTTCCTG GTAGGAGGAA TGTGTAGATA TGGGGTGGGG GTGGGGTTCA CCAACAAGGG
  GAAACTCCCT ATTCGCTAAG CATATTTAAT GTCATAGTAA CATATCAGGA GAGAACTGTC
  ATTTTAAAAT CTAATATAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359508343	MGP_WTSI_3_122430927	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216882324					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359508343	MGP_WTSI_3_122430927	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122521658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	783 bp proximal
Pde5a	phosphodiesterase 5A, cGMP-specific	1164 bp upstream
Rr584392	regulatory region 584392	459 bp proximal
Rr584393	regulatory region 584393	913 bp proximal
Rr584394	regulatory region 584394	1071 bp proximal
Rr584395	regulatory region 584395	1572 bp proximal
Tssr31509	transcription start site region 31509	935 bp upstream
Tssr31510	transcription start site region 31510	995 bp upstream
Tssr31511	transcription start site region 31511	1110 bp upstream
Tssr31512	transcription start site region 31512	1154 bp upstream
Tssr31513	transcription start site region 31513	1189 bp upstream
Tssr31514	transcription start site region 31514	1700 bp upstream
Tssr31515	transcription start site region 31515	1841 bp upstream
Tssr31516	transcription start site region 31516	1861 bp upstream
Tssr31517	transcription start site region 31517	1909 bp upstream