rs216884475 SNP Detail

Summary

• ID
  rs216884475
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28527789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGTGAT GAGGCCTCAG
  TGACTTTCTA GATCCTCCTG CCTTGACCTG CTGTCCAGCC TGCCTCTTGT TTATTCTATT
  TTGTCTTATA TTTTTGCACA TATGTGTGAG TACATTTACG TGTGTGTACA CATGGATAAA
  GGCACCAGCC CAAGGTTGTC CTGTGTCTGT TTGTCTTCCT TCCTTCTTCT TCTTCTTCTT
  M
  TCTCTCTCCT CCTTTCTTAC TTCCTTTCTT TCTTTCTTTT TAATAATTTA TTTATTTTTA
  TTTTATGTAC ATTGGTGAGT TGACTGAATG TATGTCTATG TGTGTGTGTC AGATCCCCTG
  GAACTGGAGT TACAGGCAGT CGGTGCTGGA ATTTGAACCC AGATCCCCTG AAAGAGCCAC
  CAGTGCTCTT AACTGCTGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss370868062	MGP_WTSI_7_29613383	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs216884475					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370868062	MGP_WTSI_7_29613383	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28527789 () rs orientation: forward

Symbol	Name	Function Class
Ech1	enoyl coenzyme A hydratase 1, peroxisomal	within coordinates
Rr155798	regulatory region 155798	1189 bp distal
Rr167384	regulatory region 167384	1788 bp distal
Tssr65551	transcription start site region 65551	840 bp downstream
Tssr65552	transcription start site region 65552	732 bp downstream
Tssr65553	transcription start site region 65553	1643 bp upstream
Tssr65554	transcription start site region 65554	1723 bp upstream
Tssr65555	transcription start site region 65555	1743 bp upstream
Tssr65556	transcription start site region 65556	1778 bp upstream