rs216897367 SNP Detail

Summary

• ID
  rs216897367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:46924124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGGGAGG CGGGAATGGC
  GCCGATGGGG CGGGACCTGA GAGGAGCGGT GGGTGTGATG GGGCGGGACA GCCTCGACCT
  GTGCGACAGG AGGGGAGGAG CTGGCGAGGG GGAGTGGGCG CGCTAAGAGA TGGGGCGGGG
  AGGAGCCTGC GGACGGGGCG GGGCGGCGTG GCACGGCACG CGCACTACCA GCCGCCCGGC
  Y
  CTGCTGCTGC TGCTGCAACG CCGGTGGCGC AGCCAAGAGA GCAGCTGCGG CCGCGACTCC
  TTAAATAGCA TCGCAACCCG GCGCGGGGCA GTTCGTGGAT TGCAGTGACA GCCGCCTGTG
  GAGCAGCCCG GGCAGCGGAG GAGGTGAGTG CGCCAGCCGC GAAGGGCCGC GAGTCGGCCA
  AGGCGACCCT AGCCGGGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374534978	MGP_WTSI_8_47556441	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216897367					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374534978	MGP_WTSI_8_47556441	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:46924124 () rs orientation: forward

Symbol	Name	Function Class
Acsl1	acyl-CoA synthetase long-chain family member 1	90 bp upstream
Cpgi20317	CpG island 20317	within coordinates
Gm45244	predicted gene 45244	304 bp downstream
Gm64268	predicted gene, 64268	123 bp upstream
Rr186591	regulatory region 186591	within coordinates
Rr368530	regulatory region 368530	230 bp downstream
Tssr2561	transcription start site region 2561	624 bp upstream
Tssr77199	transcription start site region 77199	9 bp downstream
Tssr77200	transcription start site region 77200	within coordinates
Tssr77201	transcription start site region 77201	82 bp upstream
Tssr77202	transcription start site region 77202	606 bp upstream
Tssr77203	transcription start site region 77203	632 bp upstream
Tssr77204	transcription start site region 77204	800 bp upstream
Tssr77205	transcription start site region 77205	849 bp upstream
Tssr77206	transcription start site region 77206	1273 bp upstream
Tssr77207	transcription start site region 77207	1310 bp upstream
Tssr81204	transcription start site region 81204	519 bp downstream
Tssr81205	transcription start site region 81205	552 bp downstream
Tssr81206	transcription start site region 81206	1340 bp downstream