rs216899967 SNP Detail

Summary

• ID
  rs216899967
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135776773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGCAGC GTATTCGCAA
  TGAGCGGGAG AAGGAAAGGC AGAACCGCCT GGCTGTGAGT GACCCTAGCC CGGCCACTGA
  GCCCTCGGTC CCATATCTCT TCACAGACAT TGGTTCAAGT GGCAGCATTT ATCACATCAC
  ATAAATCCAT GTCATTGACC CAGTGTTGAC ATCGTACCAA TGAACAGGAC AGACAGACAG
  R
  CCAGGGCCTC ATGTCCATGA TTTTAAGACC CTCTAGCCCC CATCCCTTCC CTAGTGCAGG
  CTACATGGAG ACTGAGGGCC TCTCAGCCTG GGGGCATGGT GGGATTTTAT AGACATGAAT
  CAAGGCTTCA TTAACTCATT CATACAACAA TTCATCTATC CATTCAGTAG ACTTCAGCAT
  GCCCATCTTG TGCCAGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351552068	MGP_WTSI_1_137745612	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216899967					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351552068	MGP_WTSI_1_137745612	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135776773 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	1173 bp distal
Rr12645	regulatory region 12645	1628 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1295 bp downstream
Tssr226	transcription start site region 226	1025 bp upstream
Tssr227	transcription start site region 227	405 bp downstream
Tssr9015	transcription start site region 9015	1299 bp downstream
Tssr9016	transcription start site region 9016	1047 bp downstream
Tssr9017	transcription start site region 9017	1009 bp downstream
Tssr9018	transcription start site region 9018	991 bp downstream
Tssr9019	transcription start site region 9019	958 bp downstream
Tssr9020	transcription start site region 9020	187 bp downstream
Tssr9021	transcription start site region 9021	167 bp downstream
Tssr9022	transcription start site region 9022	308 bp upstream
Tssr9023	transcription start site region 9023	327 bp upstream
Tssr9024	transcription start site region 9024	421 bp upstream
Tssr9025	transcription start site region 9025	710 bp upstream
Tssr9026	transcription start site region 9026	912 bp upstream
Tssr9027	transcription start site region 9027	1022 bp upstream
Tssr9028	transcription start site region 9028	1062 bp upstream
Tssr9029	transcription start site region 9029	1642 bp upstream
Tssr9030	transcription start site region 9030	1677 bp upstream
Tssr9031	transcription start site region 9031	1736 bp upstream
Tssr13890	transcription start site region 13890	1260 bp upstream
Tssr13891	transcription start site region 13891	1015 bp upstream
Tssr13892	transcription start site region 13892	948 bp upstream
Tssr13893	transcription start site region 13893	931 bp upstream
Tssr13894	transcription start site region 13894	182 bp upstream
Tssr13895	transcription start site region 13895	138 bp upstream
Tssr13896	transcription start site region 13896	343 bp downstream
Tssr13897	transcription start site region 13897	414 bp downstream
Tssr13898	transcription start site region 13898	1702 bp downstream
Tssr13899	transcription start site region 13899	1770 bp downstream
Tssr13900	transcription start site region 13900	1780 bp downstream