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rs216901390 SNP Detail
Summary
  • ID
    rs216901390
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44128808 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CCGAG TTCTGGGATT AAAGGCATGT
R
CCACCATGCC CGGCTCATCT CATTT                                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
LG/J
SM/J
ss322198934 CHEV_7_51734754 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs216901390 SNP A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128808 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2225 transcription start site region 2225 1965 bp downstream
Tssr2226 transcription start site region 2226 1439 bp downstream
Tssr2227 transcription start site region 2227 364 bp downstream
Tssr2228 transcription start site region 2228 694 bp upstream
Tssr2229 transcription start site region 2229 970 bp upstream
Tssr2230 transcription start site region 2230 1149 bp upstream
Tssr2231 transcription start site region 2231 1282 bp upstream
Tssr2232 transcription start site region 2232 1457 bp upstream
Tssr2233 transcription start site region 2233 1490 bp upstream
Tssr2234 transcription start site region 2234 1649 bp upstream
Tssr66244 transcription start site region 66244 1986 bp downstream
Tssr66245 transcription start site region 66245 1924 bp downstream
Tssr66246 transcription start site region 66246 1896 bp downstream
Tssr66247 transcription start site region 66247 1849 bp downstream
Tssr66248 transcription start site region 66248 1808 bp downstream
Tssr66249 transcription start site region 66249 1785 bp downstream
Tssr66250 transcription start site region 66250 1766 bp downstream
Tssr66251 transcription start site region 66251 1741 bp downstream
Tssr66252 transcription start site region 66252 1710 bp downstream
Tssr66253 transcription start site region 66253 1682 bp downstream
Tssr66254 transcription start site region 66254 1634 bp downstream
Tssr66255 transcription start site region 66255 1607 bp downstream
Tssr66256 transcription start site region 66256 1558 bp downstream
Tssr66257 transcription start site region 66257 1547 bp downstream
Tssr66258 transcription start site region 66258 1504 bp downstream
Tssr66259 transcription start site region 66259 1468 bp downstream
Tssr66260 transcription start site region 66260 1361 bp downstream
Tssr66261 transcription start site region 66261 1340 bp downstream
Tssr66262 transcription start site region 66262 1333 bp downstream
Tssr66263 transcription start site region 66263 1321 bp downstream
Tssr66264 transcription start site region 66264 1297 bp downstream
Tssr66265 transcription start site region 66265 1254 bp downstream
Tssr66266 transcription start site region 66266 1237 bp downstream
Tssr66267 transcription start site region 66267 1200 bp downstream
Tssr66268 transcription start site region 66268 1184 bp downstream
Tssr66269 transcription start site region 66269 1148 bp downstream
Tssr66270 transcription start site region 66270 1113 bp downstream
Tssr66271 transcription start site region 66271 1081 bp downstream
Tssr66272 transcription start site region 66272 1029 bp downstream
Tssr66273 transcription start site region 66273 1011 bp downstream
Tssr66274 transcription start site region 66274 1006 bp downstream
Tssr66275 transcription start site region 66275 986 bp downstream
Tssr66276 transcription start site region 66276 966 bp downstream
Tssr66277 transcription start site region 66277 946 bp downstream
Tssr66278 transcription start site region 66278 902 bp downstream
Tssr66279 transcription start site region 66279 857 bp downstream
Tssr66280 transcription start site region 66280 835 bp downstream
Tssr66281 transcription start site region 66281 795 bp downstream
Tssr66282 transcription start site region 66282 778 bp downstream
Tssr66283 transcription start site region 66283 764 bp downstream
Tssr66284 transcription start site region 66284 752 bp downstream
Tssr66285 transcription start site region 66285 738 bp downstream
Tssr66286 transcription start site region 66286 699 bp downstream
Tssr66287 transcription start site region 66287 663 bp downstream
Tssr66288 transcription start site region 66288 638 bp downstream
Tssr66289 transcription start site region 66289 556 bp downstream
Tssr66290 transcription start site region 66290 518 bp downstream
Tssr66291 transcription start site region 66291 492 bp downstream
Tssr66292 transcription start site region 66292 460 bp downstream
Tssr66293 transcription start site region 66293 438 bp downstream
Tssr66294 transcription start site region 66294 414 bp downstream
Tssr66295 transcription start site region 66295 149 bp downstream
Tssr66296 transcription start site region 66296 within coordinates
Tssr66297 transcription start site region 66297 24 bp upstream
Tssr66298 transcription start site region 66298 49 bp upstream
Tssr66299 transcription start site region 66299 118 bp upstream
Tssr66300 transcription start site region 66300 125 bp upstream
Tssr66301 transcription start site region 66301 149 bp upstream
Tssr66302 transcription start site region 66302 163 bp upstream
Tssr66303 transcription start site region 66303 204 bp upstream
Tssr66304 transcription start site region 66304 212 bp upstream
Tssr66305 transcription start site region 66305 222 bp upstream
Tssr66306 transcription start site region 66306 256 bp upstream
Tssr66307 transcription start site region 66307 313 bp upstream
Tssr66308 transcription start site region 66308 366 bp upstream
Tssr66309 transcription start site region 66309 387 bp upstream
Tssr66310 transcription start site region 66310 425 bp upstream
Tssr66311 transcription start site region 66311 502 bp upstream
Tssr66312 transcription start site region 66312 518 bp upstream
Tssr66313 transcription start site region 66313 539 bp upstream
Tssr66314 transcription start site region 66314 547 bp upstream
Tssr66315 transcription start site region 66315 567 bp upstream
Tssr66316 transcription start site region 66316 626 bp upstream
Tssr66317 transcription start site region 66317 638 bp upstream
Tssr66318 transcription start site region 66318 683 bp upstream
Tssr66319 transcription start site region 66319 706 bp upstream
Tssr66320 transcription start site region 66320 733 bp upstream
Tssr66321 transcription start site region 66321 751 bp upstream
Tssr66322 transcription start site region 66322 771 bp upstream
Tssr66323 transcription start site region 66323 817 bp upstream
Tssr66324 transcription start site region 66324 846 bp upstream
Tssr66325 transcription start site region 66325 876 bp upstream
Tssr66326 transcription start site region 66326 917 bp upstream
Tssr66327 transcription start site region 66327 931 bp upstream
Tssr66328 transcription start site region 66328 947 bp upstream
Tssr66329 transcription start site region 66329 986 bp upstream
Tssr66330 transcription start site region 66330 1005 bp upstream
Tssr66331 transcription start site region 66331 1019 bp upstream
Tssr66332 transcription start site region 66332 1040 bp upstream
Tssr66333 transcription start site region 66333 1088 bp upstream
Tssr66334 transcription start site region 66334 1100 bp upstream
Tssr66335 transcription start site region 66335 1109 bp upstream
Tssr66336 transcription start site region 66336 1118 bp upstream
Tssr66337 transcription start site region 66337 1136 bp upstream
Tssr66338 transcription start site region 66338 1192 bp upstream
Tssr66339 transcription start site region 66339 1243 bp upstream
Tssr66340 transcription start site region 66340 1288 bp upstream
Tssr66341 transcription start site region 66341 1333 bp upstream
Tssr66342 transcription start site region 66342 1395 bp upstream
Tssr66343 transcription start site region 66343 1427 bp upstream
Tssr66344 transcription start site region 66344 1572 bp upstream
Tssr66345 transcription start site region 66345 1605 bp upstream
Tssr66346 transcription start site region 66346 1661 bp upstream
Tssr66347 transcription start site region 66347 1699 bp upstream
Tssr66348 transcription start site region 66348 1740 bp upstream
Tssr66349 transcription start site region 66349 1764 bp upstream
Tssr66350 transcription start site region 66350 1792 bp upstream
Tssr66351 transcription start site region 66351 1800 bp upstream
Tssr66352 transcription start site region 66352 1836 bp upstream
Tssr66353 transcription start site region 66353 1910 bp upstream
Tssr66354 transcription start site region 66354 1924 bp upstream
Tssr66355 transcription start site region 66355 1951 bp upstream
Tssr66356 transcription start site region 66356 1968 bp upstream
Tssr66357 transcription start site region 66357 1982 bp upstream
Tssr66358 transcription start site region 66358 1994 bp upstream
Tssr72199 transcription start site region 72199 1901 bp upstream
Tssr72200 transcription start site region 72200 943 bp upstream
Tssr72201 transcription start site region 72201 433 bp upstream
Tssr72202 transcription start site region 72202 409 bp downstream
Tssr72203 transcription start site region 72203 795 bp downstream
Tssr72204 transcription start site region 72204 1391 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory