rs216903317 SNP Detail

Summary

• ID
  rs216903317
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108883684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTGGGT TTCTGCATCA
  CAGCTCTGTA ATATGCTGGG TATGAACTGG CCAGATACAT ATGTATCCGA CATTAATGGG
  AGGGGAGGCC CCTGGTTCTG TGGTGGTTTG ATGCTCCAGG GTAGGAGGAT GCTGGAGTGG
  TGGGGCGGGA GTGGGTGGGG GTTGGGGGAG CATTCTCATA GAGGCAAAGG GGAGGGGGGA
  R
  GGGGGAACGG GATTGGGGGA TTATGGAGGG GTAATCAGGA AGGGGGGATA TCATTTGAGA
  TGTAAACAAA TGGAATGATT AATAAAAATA AAGTAAAATA AAATTTACAA GATAAAAATT
  GAGACAAGAA AAAACAGAAA GAAAGGAAGA AAATGAAATA TACTAACAGA ATGATGGAGT
  ATACTAAATA ACTTGCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss359177432	MGP_WTSI_3_108779286	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs216903317					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359177432	MGP_WTSI_3_108779286	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108883684 () rs orientation: forward

Symbol	Name	Function Class
Eeig2	EEIG family member 2	Intron
Gm65815	predicted gene, 65815	within coordinates
Rr583360	regulatory region 583360	1758 bp distal
Rr583361	regulatory region 583361	1382 bp proximal
Rr583362	regulatory region 583362	1454 bp proximal
Tssr35213	transcription start site region 35213	123 bp downstream
Tssr35214	transcription start site region 35214	182 bp downstream
Tssr35215	transcription start site region 35215	199 bp downstream
Tssr35216	transcription start site region 35216	325 bp downstream