rs216921270 SNP Detail

Summary

• ID
  rs216921270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167432836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTCACTC TGCGGCAGGG
  CTACGTGGGC ACTTGCTGGA ATGGACTCTT TAGGCTTGCA ACAAAGTTCG GGAACGGTGT
  TTGAGCTCCC CCCACCCCCA TTTCCCAGAG GACAGAAAGC TGAGGGCCTG ACAAGGTCAT
  GGGAACCCTG AGATTTCTCT TACCCCTGTG GTCCCCTCCT TCCCTCCCTC CTTAACCTGT
  R
  TGTATGCCTT CCTGGGTCTC TCTCTGTGGT GTGTGTGTGT GTTCTGGACT GGTCATATCA
  TTCCGAGCCC CAGCTTCCCT GTCTATAAAA CAGGATGATA ACAGTCCTCT CCTCTCCTCT
  CCTCTCCTCT CCTCTCCTCT CCTCTCCTCT CCTCTCCTCT CCTCTCCTCT CCTCTCCTCT
  CCTCTCCTCT CCTCTCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356508158	MGP_WTSI_2_167416416	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216921270					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356508158	MGP_WTSI_2_167416416	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167432836 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12749	CpG island 12749	1732 bp distal
Gm11475	predicted gene 11475	479 bp upstream
Gm11476	predicted gene 11476	within coordinates
Gm31619	predicted gene, 31619	1453 bp upstream
Rr397510	regulatory region 397510	1272 bp downstream
Rr570648	regulatory region 570648	1511 bp distal
Rr570649	regulatory region 570649	1122 bp distal
Rr570650	regulatory region 570650	1457 bp distal
Rr570651	regulatory region 570651	38 bp distal
Rr570652	regulatory region 570652	413 bp proximal
Tssr769	transcription start site region 769	1915 bp downstream
Tssr21821	transcription start site region 21821	1814 bp downstream
Tssr21822	transcription start site region 21822	1357 bp downstream
Tssr21823	transcription start site region 21823	1300 bp downstream
Tssr21824	transcription start site region 21824	166 bp downstream
Tssr27780	transcription start site region 27780	1459 bp upstream
Tssr27781	transcription start site region 27781	389 bp upstream