rs216928879 SNP Detail

Summary

• ID
  rs216928879
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11211328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTTTATC CAGTTCCTCA
  CTGGAATGGA GTGGTCTCTT CATCTTCCAT GAATGTATGA GCATGCTCTA CAGTCAGAGC
  CAACTTGCAC CTGCGTAGTT CTGGCCCTGC CTCAAATAGT CAGGAGTGCT CTGGAAAAGT
  ATATGGTTGC CTTTTTCTCT CTCTCCCTTT TCCCTCTCCC TCCCTCTTCG CCCCCCCCCC
  M
  CCTCTGTGTT TCTGTGTTGT ACATAAGTGC GTATGCTCAT GTGGAGGCTA GTGGTCTGTT
  TTAGGCACCT TTCTCAGTGG TTATCCACAT CAGTTTTTGA GACATAGTAT CGCACTGGGA
  CTTGCCAAGA ACAGCTAAGC TGTCCAGGAA TCCACCTTTC TCCATCTCTC CAGTGCTGGA
  ATTAGAACTG TACACCAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353089162	MGP_WTSI_2_11128144	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216928879					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353089162	MGP_WTSI_2_11128144	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11211328 () rs orientation: forward

Symbol	Name	Function Class
Prkcq	protein kinase C, theta	within coordinates
Rr45715	regulatory region 45715	128 bp distal
Rr45716	regulatory region 45716	73 bp proximal
Rr51202	regulatory region 51202	353 bp distal
Rr57623	regulatory region 57623	1329 bp distal
Rr63335	regulatory region 63335	1832 bp proximal
Rr367104	regulatory region 367104	1903 bp downstream
Tssr16111	transcription start site region 16111	482 bp downstream
Tssr16112	transcription start site region 16112	405 bp downstream