rs216939864 SNP Detail

Summary

• ID
  rs216939864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49024929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTCCTCA GAGACCTCCC
  CATCGTCTTC GATGTCCTCA TTCATGATCC CAGCCACTTC CTCAACGACT CTGCCATTTC
  CTACAAGTGG AACTTTGGGG ACAACACTGG CCTGTTTGTC TCCAACAATC ACACTTTGAA
  TCACACTTAT GTGCTCAATG GAACCTTCAA CCTTAACCTC ACCGTGCAAA CTGCAGTGCC
  Y
  GGGCCATGCC CTCCCCCTTC GCCTTCGACT CCGCCTCCAC CTTCAACTCC GCCCTCACCT
  CCGCCCTCAC CTCTGCCCAC ATTATCAACA CCTAGCCCCT CTTTAAGTGA GTATTTCTTG
  AGCAGTGTGA GGTTGGTGGC AGCCTTGGTG GTGGTCGACT TTGTGGTGGT CTTCATTAGT
  TACTTAGTTA TTCAGTGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368235227	MGP_WTSI_6_48997994	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216939864					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368235227	MGP_WTSI_6_48997994	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49024929 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	1545 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	1557 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56330	transcription start site region 56330	1990 bp downstream
Tssr56331	transcription start site region 56331	1945 bp downstream
Tssr56332	transcription start site region 56332	1872 bp downstream
Tssr56333	transcription start site region 56333	1834 bp downstream
Tssr56334	transcription start site region 56334	1824 bp downstream
Tssr56335	transcription start site region 56335	1804 bp downstream
Tssr56336	transcription start site region 56336	1777 bp downstream
Tssr56337	transcription start site region 56337	1754 bp downstream
Tssr56338	transcription start site region 56338	1738 bp downstream
Tssr56339	transcription start site region 56339	1724 bp downstream
Tssr56340	transcription start site region 56340	1534 bp downstream
Tssr56341	transcription start site region 56341	1274 bp downstream
Tssr56342	transcription start site region 56342	1242 bp downstream
Tssr56343	transcription start site region 56343	696 bp downstream
Tssr56344	transcription start site region 56344	672 bp downstream
Tssr56345	transcription start site region 56345	653 bp downstream
Tssr56346	transcription start site region 56346	600 bp downstream
Tssr56347	transcription start site region 56347	582 bp downstream
Tssr56348	transcription start site region 56348	559 bp downstream
Tssr56349	transcription start site region 56349	238 bp downstream
Tssr56350	transcription start site region 56350	209 bp downstream
Tssr56351	transcription start site region 56351	182 bp downstream
Tssr56352	transcription start site region 56352	163 bp downstream
Tssr56353	transcription start site region 56353	95 bp downstream
Tssr56354	transcription start site region 56354	81 bp downstream
Tssr56355	transcription start site region 56355	57 bp downstream
Tssr56356	transcription start site region 56356	39 bp downstream
Tssr56357	transcription start site region 56357	27 bp downstream
Tssr56358	transcription start site region 56358	9 bp downstream
Tssr56359	transcription start site region 56359	within coordinates
Tssr56360	transcription start site region 56360	32 bp upstream
Tssr56361	transcription start site region 56361	1887 bp upstream
Tssr60848	transcription start site region 60848	1587 bp upstream
Tssr60849	transcription start site region 60849	633 bp upstream
Tssr60850	transcription start site region 60850	580 bp upstream
Tssr60851	transcription start site region 60851	118 bp upstream
Tssr60852	transcription start site region 60852	89 bp upstream
Tssr60853	transcription start site region 60853	77 bp upstream
Tssr60854	transcription start site region 60854	60 bp upstream
Tssr60855	transcription start site region 60855	15 bp upstream
Tssr60856	transcription start site region 60856	2 bp downstream
Tssr60857	transcription start site region 60857	31 bp downstream